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Accelrys discovery studio 3.0 software suite
Discovery Studio 3.0 Software Suite, supplied by Accelrys, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/discovery+studio+3%2E0+software+suite/discovery+studio+2+5/pm38203708-370-10-15
Average 90 stars, based on 1 article reviews
discovery studio 3.0 software suite - by Bioz Stars, 2026-10
90/100 stars

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Related Articles

Software:

Article Title: Bach1 derepression is neuroprotective in a mouse model of Parkinson’s disease
Article Snippet: Docking experiments were performed using the CDOCKER algorithm as implemented in the Discovery studio 3.0 software suite (Accelrys, San Diego, CA), followed by force field minimization and binding energy calculations the Keap1 Kelch domain crystal structure with the bound Cpd16 inhibitor (4IQK.pdb) as a template structure.

Article Title: Specificity of viscumin revised. As probed with a printed glycan array.
Article Snippet: Viscumin, a lectin used in anti-cancer therapy, was originally considered as bGal recognizing protein; later, an ability to bind 60-sialyl N-acetyllactosamine (60SLN) terminated gangliosides was found.. Here we probed viscumin with a printed glycan array (PGA) containing a large number of mammalian sulfated glycans, and found a strong binding to glycans with 6-O-SuGal moiety as lactose, N-acetyllactosamine (LN), di-N-acetyllactosamine (LacdiNAc), and even 6-O-SuGalNAca (but not SiaTn).. Also, the ability to bind some of aGal terminated glycans, including Gala1-3Galb1-4GlcNAc, was observed.

Article Title: Structure-Functional Examination of Novel Ribonucleoside Hydrolase C (RihC) from Limosilactobacillus reuteri LR1.
Article Snippet: The missing loop (DGNDQ, residues 228–232) was created manually with Discovery Studio 3.0 software suite (Accelrys, San Diego, CA, USA) using an insertion tool of residues according to the protein sequence received by MALDI-TOF.

Article Title: Structure–Activity Relationships and Transcriptomic Analysis of Hypoxia-Inducible Factor Prolyl Hydroxylase Inhibitors
Article Snippet: Docking experiments were performed using the CDOCKER algorithm as implemented in the Discovery studio 3.0 software suite (Accelrys, San Diego, CA, USA), followed by force field minimization and binding energy calculations using a crystal structure of HIF PHD2 (PDB: 2G19).

Article Title: Identification of a potent Nrf2 displacement activator among aspirin-containing prodrugs.
Article Snippet: Docking experiments were performed using the CDOCKER algorithm as implemented in the Discovery studio 3.0 software suite (Accelrys, San Diego, CA), followed by force field minimization and binding energy calculations using the Keap1 Kelch domain crystal structure with the bound NMBSA inhibitor (4IQK.pdb) as a template structure.

Article Title: Analysis of the three-dimensional structure of the African horse sickness virus VP7 trimer by homology modelling.
Article Snippet: VP7 is the major core protein of orbiviruses and is essential for virion assembly.. African horse sickness virus (AHSV) VP7 self-assembles into highly insoluble crystalline particles – an attribute that may be related to the role of AHSV VP7 in virus assembly but also prevents crystallization.. Given that this inherent insolubility is unique to AHSV VP7, we use amino acid sequence conservation analysis between AHSV VP7 and other orbiviruses to identify putative key residues that drive AHSV VP7 self-assembly.

Sequencing:

Article Title: Bach1 derepression is neuroprotective in a mouse model of Parkinson’s disease
Article Snippet: Docking experiments were performed using the CDOCKER algorithm as implemented in the Discovery studio 3.0 software suite (Accelrys, San Diego, CA), followed by force field minimization and binding energy calculations the Keap1 Kelch domain crystal structure with the bound Cpd16 inhibitor (4IQK.pdb) as a template structure.

Article Title: Specificity of viscumin revised. As probed with a printed glycan array.
Article Snippet: Viscumin, a lectin used in anti-cancer therapy, was originally considered as bGal recognizing protein; later, an ability to bind 60-sialyl N-acetyllactosamine (60SLN) terminated gangliosides was found.. Here we probed viscumin with a printed glycan array (PGA) containing a large number of mammalian sulfated glycans, and found a strong binding to glycans with 6-O-SuGal moiety as lactose, N-acetyllactosamine (LN), di-N-acetyllactosamine (LacdiNAc), and even 6-O-SuGalNAca (but not SiaTn).. Also, the ability to bind some of aGal terminated glycans, including Gala1-3Galb1-4GlcNAc, was observed.

Article Title: Structure-Functional Examination of Novel Ribonucleoside Hydrolase C (RihC) from Limosilactobacillus reuteri LR1.
Article Snippet: The missing loop (DGNDQ, residues 228–232) was created manually with Discovery Studio 3.0 software suite (Accelrys, San Diego, CA, USA) using an insertion tool of residues according to the protein sequence received by MALDI-TOF.

Article Title: Structure–Activity Relationships and Transcriptomic Analysis of Hypoxia-Inducible Factor Prolyl Hydroxylase Inhibitors
Article Snippet: Docking experiments were performed using the CDOCKER algorithm as implemented in the Discovery studio 3.0 software suite (Accelrys, San Diego, CA, USA), followed by force field minimization and binding energy calculations using a crystal structure of HIF PHD2 (PDB: 2G19).

Article Title: Identification of a potent Nrf2 displacement activator among aspirin-containing prodrugs.
Article Snippet: Docking experiments were performed using the CDOCKER algorithm as implemented in the Discovery studio 3.0 software suite (Accelrys, San Diego, CA), followed by force field minimization and binding energy calculations using the Keap1 Kelch domain crystal structure with the bound NMBSA inhibitor (4IQK.pdb) as a template structure.

Article Title: Analysis of the three-dimensional structure of the African horse sickness virus VP7 trimer by homology modelling.
Article Snippet: VP7 is the major core protein of orbiviruses and is essential for virion assembly.. African horse sickness virus (AHSV) VP7 self-assembles into highly insoluble crystalline particles – an attribute that may be related to the role of AHSV VP7 in virus assembly but also prevents crystallization.. Given that this inherent insolubility is unique to AHSV VP7, we use amino acid sequence conservation analysis between AHSV VP7 and other orbiviruses to identify putative key residues that drive AHSV VP7 self-assembly.

Binding Assay:

Article Title: Bach1 derepression is neuroprotective in a mouse model of Parkinson’s disease
Article Snippet: Docking experiments were performed using the CDOCKER algorithm as implemented in the Discovery studio 3.0 software suite (Accelrys, San Diego, CA), followed by force field minimization and binding energy calculations the Keap1 Kelch domain crystal structure with the bound Cpd16 inhibitor (4IQK.pdb) as a template structure.

Article Title: Specificity of viscumin revised. As probed with a printed glycan array.
Article Snippet: Viscumin, a lectin used in anti-cancer therapy, was originally considered as bGal recognizing protein; later, an ability to bind 60-sialyl N-acetyllactosamine (60SLN) terminated gangliosides was found.. Here we probed viscumin with a printed glycan array (PGA) containing a large number of mammalian sulfated glycans, and found a strong binding to glycans with 6-O-SuGal moiety as lactose, N-acetyllactosamine (LN), di-N-acetyllactosamine (LacdiNAc), and even 6-O-SuGalNAca (but not SiaTn).. Also, the ability to bind some of aGal terminated glycans, including Gala1-3Galb1-4GlcNAc, was observed.

Article Title: Structure-Functional Examination of Novel Ribonucleoside Hydrolase C (RihC) from Limosilactobacillus reuteri LR1.
Article Snippet: The missing loop (DGNDQ, residues 228–232) was created manually with Discovery Studio 3.0 software suite (Accelrys, San Diego, CA, USA) using an insertion tool of residues according to the protein sequence received by MALDI-TOF.

Article Title: Structure–Activity Relationships and Transcriptomic Analysis of Hypoxia-Inducible Factor Prolyl Hydroxylase Inhibitors
Article Snippet: Docking experiments were performed using the CDOCKER algorithm as implemented in the Discovery studio 3.0 software suite (Accelrys, San Diego, CA, USA), followed by force field minimization and binding energy calculations using a crystal structure of HIF PHD2 (PDB: 2G19).

Article Title: Identification of a potent Nrf2 displacement activator among aspirin-containing prodrugs.
Article Snippet: Docking experiments were performed using the CDOCKER algorithm as implemented in the Discovery studio 3.0 software suite (Accelrys, San Diego, CA), followed by force field minimization and binding energy calculations using the Keap1 Kelch domain crystal structure with the bound NMBSA inhibitor (4IQK.pdb) as a template structure.

Article Title: Analysis of the three-dimensional structure of the African horse sickness virus VP7 trimer by homology modelling.
Article Snippet: VP7 is the major core protein of orbiviruses and is essential for virion assembly.. African horse sickness virus (AHSV) VP7 self-assembles into highly insoluble crystalline particles – an attribute that may be related to the role of AHSV VP7 in virus assembly but also prevents crystallization.. Given that this inherent insolubility is unique to AHSV VP7, we use amino acid sequence conservation analysis between AHSV VP7 and other orbiviruses to identify putative key residues that drive AHSV VP7 self-assembly.

In Silico:

Article Title: Bach1 derepression is neuroprotective in a mouse model of Parkinson’s disease
Article Snippet: Docking experiments were performed using the CDOCKER algorithm as implemented in the Discovery studio 3.0 software suite (Accelrys, San Diego, CA), followed by force field minimization and binding energy calculations the Keap1 Kelch domain crystal structure with the bound Cpd16 inhibitor (4IQK.pdb) as a template structure.

Article Title: Specificity of viscumin revised. As probed with a printed glycan array.
Article Snippet: Viscumin, a lectin used in anti-cancer therapy, was originally considered as bGal recognizing protein; later, an ability to bind 60-sialyl N-acetyllactosamine (60SLN) terminated gangliosides was found.. Here we probed viscumin with a printed glycan array (PGA) containing a large number of mammalian sulfated glycans, and found a strong binding to glycans with 6-O-SuGal moiety as lactose, N-acetyllactosamine (LN), di-N-acetyllactosamine (LacdiNAc), and even 6-O-SuGalNAca (but not SiaTn).. Also, the ability to bind some of aGal terminated glycans, including Gala1-3Galb1-4GlcNAc, was observed.

Article Title: Structure-Functional Examination of Novel Ribonucleoside Hydrolase C (RihC) from Limosilactobacillus reuteri LR1.
Article Snippet: The missing loop (DGNDQ, residues 228–232) was created manually with Discovery Studio 3.0 software suite (Accelrys, San Diego, CA, USA) using an insertion tool of residues according to the protein sequence received by MALDI-TOF.

Article Title: Structure–Activity Relationships and Transcriptomic Analysis of Hypoxia-Inducible Factor Prolyl Hydroxylase Inhibitors
Article Snippet: Docking experiments were performed using the CDOCKER algorithm as implemented in the Discovery studio 3.0 software suite (Accelrys, San Diego, CA, USA), followed by force field minimization and binding energy calculations using a crystal structure of HIF PHD2 (PDB: 2G19).

Article Title: Identification of a potent Nrf2 displacement activator among aspirin-containing prodrugs.
Article Snippet: Docking experiments were performed using the CDOCKER algorithm as implemented in the Discovery studio 3.0 software suite (Accelrys, San Diego, CA), followed by force field minimization and binding energy calculations using the Keap1 Kelch domain crystal structure with the bound NMBSA inhibitor (4IQK.pdb) as a template structure.

Article Title: Analysis of the three-dimensional structure of the African horse sickness virus VP7 trimer by homology modelling.
Article Snippet: VP7 is the major core protein of orbiviruses and is essential for virion assembly.. African horse sickness virus (AHSV) VP7 self-assembles into highly insoluble crystalline particles – an attribute that may be related to the role of AHSV VP7 in virus assembly but also prevents crystallization.. Given that this inherent insolubility is unique to AHSV VP7, we use amino acid sequence conservation analysis between AHSV VP7 and other orbiviruses to identify putative key residues that drive AHSV VP7 self-assembly.



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